Education

Ph.D. in Veterinary Microbiology, University of Kentucky, Lexington, KY., 2001

Current position

Research Microbiologist, National Animal Disease Centre, USDA, Ames, IA

Publications (since 2005)

1. Wilson-Welder, J. H., Alt, D. P.andNally, J. E.(2015). The etiology of digital dermatitis in ruminants: recent perspectives. Veterinary medicine: research and reports. 6 155-164.
   
2. Piras, C., Soggiu, A., Greco, V., Martino, P. A., Del Chierico, F., Putignani, L., Urbani, A., Nally, J. E., Bonizzi, L. and Roncada, P. (2015). Mechanisms of antibiotic resistance to enrofloxacin in uropathogenic Escherichia coli in dog. J Proteomics.
   
3. Goeijenbier, M., Gasem, M. H., Meijers, J. C., Hartskeerl, R. A., Ahmed, A., Goris, M. G., Isbandrio, B., Schuller, S. S., Osterhaus, A. D., Martina, B. E., van Gorp, E. C., Nally, J. E. and Wagenaar, J. F. (2015). Markers of endothelial cell activation and immune activation are increased in patients with severe leptospirosis and associated with disease severity. J Infect.
   
4. Schuller, S., Sergeant, K., Renaut, J., Callanan, J. J., Scaife, C. and Nally, J. E. (2015). Comparative proteomic analysis of lung tissue from guinea pigs with leptospiral pulmonary haemorrhage syndrome (LPHS) reveals a decrease in abundance of host proteins involved in cytoskeletal and cellular organization. J Proteomics 122: 55-72.
   
5. Schuller, S., Callanan, J. J., Worrall, S., Francey, T., Schweighauser, A., Kohn, B., Klopfleisch, R., Posthaus, H. and Nally, J. E. (2015). Immunohistochemical detection of IgM and IgG in lung tissue of dogs with leptospiral pulmonary haemorrhage syndrome (LPHS). Comp Immunol Microbiol Infect Dis 40: 47-53.
   
6. Nally, J. E., Mullen, W., Callanan, J. J., Mischak, H. and Albalat, A. (2015). Detection of urinary biomarkers in reservoir hosts of leptospirosis by capillary electrophoresis-mass spectrometry. Proteomics Clin Appl 9(5-6): 543-551.
   
7. Schuller, S., Francey, T., Hartmann, K., Hugonnard, M., Kohn, B., Nally, J. E. and Sykes, J. (2015). European consensus statement on leptospirosis in dogs and cats. J Small AnimPract 56(3): 159-179.
   
8. Almeida, A. M., Bassols, A., Bendixen, E., Bhide, M., Ceciliani, F., Cristobal, S., Eckersall, P. D., Hollung, K., Lisacek, F., Mazzucchelli, G., McLaughlin, M., Miller, I., Nally, J. E., Plowman, J., Renaut, J., Rodrigues, P., Roncada, P., Staric, J. and Turk, R. (2015). Animal board invited review: advances in proteomics for animal and food sciences. Animal 9(1): 1-17.
   
9. Witchell, T. D., Eshghi, A., Nally, J. E., Hof, R., Boulanger, M. J., Wunder, E. A., Jr., Ko, A. I., Haake, D. A. and Cameron, C. E. (2014). Post-translational modification of LipL32 during Leptospira interrogans infection. PLoS Negl Trop Dis 8(10): e3280.
   
10. Benkirane, A., Noury, S., Hartskeerl, R. A., Goris, M. G., Ahmed, A. and Nally, J. E. (2014). Preliminary Investigations on the distribution of Leptospiraserovars in domestic animals in North-west Morocco. TransboundEmerg Dis. (Epub ahead of print)
    
11. Caimano, M. J., Sivasankaran, S. K., Allard, A., Hurley, D., Hokamp, K., Grassmann, A. A., Hinton, J. C. and Nally, J. E. (2014). A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni. PLoS Pathog 10(3): e1004004. 
    
12. Albalat, A., Husi, H., Siwy, J., Nally, J. E., McLauglin, M., Eckersall, P. D. and Mullen, W. (2014). Capillary electrophoresis interfaced with a mass spectrometer (CE-MS): technical considerations and applicability for biomarker studies in animals. Curr Protein Pept Sci 15(1): 23-35.
    
13. Condell, O., Power, K. A., Handler, K., Finn, S., Sheridan, A., Sergeant, K., Renaut, J., Burgess, C. M., Hinton, J. C., Nally, J. E. and Fanning, S. (2014). Comparative analysis of Salmonella susceptibility and tolerance to the biocide chlorhexidine identifies a complex cellular defense network. Front Microbiol 5: 373.
    
14. Sheridan, A., Lenahan, M., Condell, O., Bonilla-Santiago, R., Sergeant, K., Renaut, J., Duffy, G., Fanning, S., Nally, J. E. and Burgess, C. M. (2013). Proteomic and phenotypic analysis of triclosan tolerant verocytotoxigenic Escherichia coli O157:H19. J Proteomics 80: 78-90.
    
15. Gutierrez, J., O'Donovan, J., Proctor, A., Brady, C., Marques, P. X., Worrall, S., Nally, J. E., McElroy, M., Bassett, H., Fagan, J., Maley, S., Buxton, D., Sammin, D. and Markey, B. K. (2012). Application of quantitative real-time polymerase chain reaction for the diagnosis of toxoplasmosis and enzootic abortion of ewes. J Vet Diagn Invest 24(5): 846-854.
    
16. Condell, O., Sheridan, A., Power, K. A., Bonilla-Santiago, R., Sergeant, K., Renaut, J., Burgess, C., Fanning, S. and Nally, J. E. (2012). Comparative proteomic analysis of Salmonella tolerance to the biocide active agent triclosan. J Proteomics 75(14): 4505-4519.
    
17. O'Donovan, J., Proctor, A., Gutierrez, J., Worrell, S., Nally, J., Marques, P., Brady, C., McElroy, M., Sammin, D., Buxton, D., Maley, S., Bassett, H. and Markey, B. (2012). Distribution of lesions in fetal brains following experimental infection of pregnant sheep with Toxoplasma gondii. Vet Pathol 49(3): 462-469.
    
18. Marques, P. X., O'Donovan, J., Williams, E. J., Gutierrez, J., Worrall, S., McElroy, M., Proctor, A., Brady, C., Sammin, D., Bassett, H., Buxton, D., Maley, S., Markey, B. K. and Nally, J. E. (2012). Detection of Toxoplasma gondii antigens reactive with antibodies from serum, amniotic, and allantoic fluids from experimentally infected pregnant ewes. Vet Parasitol 185(2-4): 91-100.
    
19. Chow, E., Deville, J., Nally, J., Lovett, M. and Nielsen-Saines, K. (2012). Prolonged leptospira urinary shedding in a 10-year-old girl. Case Rep Pediatr 2012: 169013.
    
20. Mullen, M. P., Forde, N., Parr, M. H., Diskin, M. G., Morris, D. G., Nally, J. E., Evans, A. C. and Crowe, M. A. (2012). Alterations in systemic concentrations of progesterone during the early luteal phase affect RBP4 expression in the bovine uterus. Reprod Fertil Dev 24(5): 715-722.
    
21. Worrall, S., Sammin, D. J., Bassett, H. F., Reid, C. R., Gutierrez, J., Marques, P. X., Nally, J. E., O'Donovan, J., Williams, E. J., Proctor, A. and Markey, B. K. (2011). Interferon-gamma expression in trophoblast cells in pregnant ewes challenged with Chlamydophila abortus. J Reprod Immunol 90(2): 214-219.
    
22. Challa, S., Nally, J. E., Jones, C. and Sheoran, A. S. (2011). Passive immunization with Leptospira LPS-specific agglutinating but not non-agglutinating monoclonal antibodies protect guinea pigs from fatal pulmonary hemorrhages induced by serovar Copenhageni challenge. Vaccine 29(27): 4431-4434.
    
23. Juvet, F., Schuller, S., O'Neill, E. J., O'Neill, P. A. and Nally, J. E. (2011). Urinary shedding of spirochaetes in a dog with acute leptospirosis despite treatment. Vet Rec 168(21): 564.
    
24. Goris, M. G., Wagenaar, J. F., Hartskeerl, R. A., van Gorp, E. C., Schuller, S., Monahan, A. M., Nally, J. E., van der Poll, T. and van 't Veer, C. (2011). Potent innate immune response to pathogenic leptospira in human whole blood. PLoS One 6(3): e18279.
    
25. Marques, P. X., O'Donovan, J., Souda, P., Gutierrez, J., Williams, E. J., Worrall, S., McElroy, M., Proctor, A., Brady, C., Sammin, D., Basset, H., Whitelegge, J. P., Markey, B. K. and Nally, J. E. (2011). Amniotic and allantoic fluids from experimentally infected sheep contain immunoglobulin specific for Chlamydophila abortus. Vet ImmunolImmunopathol 140(1-2): 1-9.
    
26. Bonilla-Santiago, R. and Nally, J. E. (2011). Rat model of chronic leptospirosis. CurrProtocMicrobiol Chapter 12: Unit 12E 13.
    
27. Gutierrez, J., Williams, E. J., O'Donovan, J., Brady, C., Proctor, A. F., Marques, P. X., Worrall, S., Nally, J. E., McElroy, M., Bassett, H. F., Sammin, D. J. and Markey, B. K. (2011). Monitoring clinical outcomes, pathological changes and shedding of Chlamydophila abortus following experimental challenge of periparturient ewes utilizing the natural route of infection.  Vet Microbiol 147(1-2): 119-126.
    
28. Nally, J. E., Monahan, A. M., Miller, I. S., Bonilla-Santiago, R., Souda, P. and Whitelegge, J. P. (2011). Comparative proteomic analysis of differentially expressed proteins in the urine of reservoir hosts of leptospirosis. PLoS One 6(10): e26046.
    
29. Rojas, P., Monahan, A. M., Schuller, S., Miller, I. S., Markey, B. K. and Nally, J. E. (2010). Detection and quantification of leptospires in urine of dogs: a maintenance host for the zoonotic disease leptospirosis. Eur J ClinMicrobiol Infect Dis 29(10): 1305-1309.
    
30. Gutierrez, J., O'Donovan, J., Williams, E., Proctor, A., Brady, C., Marques, P. X., Worrall, S., Nally, J. E., McElroy, M., Bassett, H., Sammin, D., Buxton, D., Maley, S. and Markey, B. K. (2010). Detection and quantification of Toxoplasma gondii in ovine maternal and foetal tissues from experimentally infected pregnant ewes using real-time PCR. Vet Parasitol 172(1-2): 8-15.
    
31. Marques, P. X., Souda, P., O'Donovan, J., Gutierrez, J., Gutierrez, E. J., Worrall, S., McElroy, M., Proctor, A., Brady, C., Sammin, D., Basset, H. F., Whitelegge, J. P., Markey, B. E. and Nally, J. E. (2010). Identification of immunologically relevant proteins of Chlamydophila abortus using sera from experimentally infected pregnant ewes. Clin Vaccine Immunol 17(8): 1274-1281.
    
32. Healy, B., Cooney, S., O'Brien, S., Iversen, C., Whyte, P., Nally, J., Callanan, J. J. and Fanning, S. (2010). Cronobacter (Enterobacter sakazakii): an opportunistic foodborne pathogen. Foodborne Pathog Dis 7(4): 339-350.
    
33. Monahan, A. M., Miller, I. S. and Nally, J. E. (2009). Leptospirosis: risks during recreational activities. J ApplMicrobiol 107(3): 707-716.
    
34. Monahan, A. M., Callanan, J. J. and Nally, J. E. (2009). Review paper: Host-pathogen interactions in the kidney during chronic leptospirosis. Vet Pathol 46(5): 792-799.
    
35. Sayers, G., Marques, P. X., Evans, N. J., O'Grady, L., Doherty, M. L., Carter, S. D. and Nally, J. E. (2009). Identification of spirochetes associated with contagious ovine digital dermatitis. J ClinMicrobiol 47(4): 1199-1201.
    
36. Monahan, A. M., Callanan, J. J. and Nally, J. E. (2008). Proteomic analysis of Leptospirainterrogans shed in urine of chronically infected hosts. Infect Immun 76(11): 4952-4958.
    
37. Mullane, N., O'Gaora, P., Nally, J. E., Iversen, C., Whyte, P., Wall, P. G. and Fanning, S. (2008). Molecular analysis of the Enterobacter sakazakii O-antigen gene locus. Appl Environ Microbiol 74(12): 3783-3794.
    
38. Crother, T. R. and Nally, J. E. (2008). Analysis of bacterial membrane proteins produced during mammalian infection using hydrophobic antigen tissue triton extraction (HATTREX). CurrProtocMicrobiol Chapter 12: Unit 12 11.
    
39. Nally, J. E., Whitelegge, J. P. and Carroll, J. A. (2007). Proteomic strategies to elucidate pathogenic mechanisms of spirochetes. Proteomics ClinAppl 1(9): 1185-1197.
    
40. Nally, J. E., Whitelegge, J. P., Bassilian, S., Blanco, D. R. and Lovett, M. A. (2007). Characterization of the outer membrane proteome of Leptospira interrogans expressed during acute lethal infection. Infect Immun 75(2): 766-773.
    
41. Nally, J. E., Fishbein, M. C., Blanco, D. R. and Lovett, M. A. (2005). Lethal infection of C3H/HeJ and C3H/SCID mice with an isolate of Leptospira interrogans serovar copenhageni. Infect Immun 73(10): 7014-7017.
    
42. Nally, J. E., Chow, E., Fishbein, M. C., Blanco, D. R. and Lovett, M. A. (2005). Changes in lipopolysaccharide O antigen distinguish acute versus chronic Leptospira interrogans infections. Infect Immun 73(6): 3251-3260.
    
43. Nally, J. E., Whitelegge, J. P., Aguilera, R., Pereira, M. M., Blanco, D. R. and Lovett, M. A. (2005). Purification and proteomic analysis of outer membrane vesicles from a clinical isolate of Leptospira interrogans serovar Copenhageni. Proteomics 5(1): 144-152.