Improve Research Reproducibility A Bio-protocol resource

KN
Kazuki Nakamae
  • Post-Doc, PtBio Inc., Japan
Research fields
  • Molecular Biology
Personal information

Education

Ph.D., Hiroshima University, 2020

Research focus

Genome Editing and Bioinformatics

Publications

https://seeds.office.hiroshima-u.ac.jp/profile/en.7eaa811749769844520e17560c007669.html
1. PtWAVE: a high-sensitive deconvolution software of sequencing trace for the detection of large indels in genome editing, BMC Bioinformatics, 26(1), 114-114, 20250429
2. Risk Prediction of RNA Off-Targets of CRISPR Base Editors in Tissue-Specific Transcriptomes Using Language Models, International Journal of Molecular Sciences, 26(4), 1723-1723, 20250218
3. DANGER analysis: risk-averse on/off-target assessment for CRISPR editing without a reference genome, Bioinformatics Advances, vbad114, 20230823
4. Genome editing and bioinformatics, Gene and Genome Editing, 3–4(100018), 20221108
5. Biased genome editing using the local accumulation of DSB repair molecules system, NATURE COMMUNICATIONS, 9(1), 3270, 20180816
6. Establishment of expanded and streamlined pipeline of PITCh knock-in - a web-based design tool for MMEJ-mediated gene knock-in, PITCh designer, and the variations of PITCh, PITCh-TG and PITCh-KIKO, BIOENGINEERED, 8(3), 302-308, 20170428
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