Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:

Liu, Q(2021). Illumina sequencing and SNP calling. Bio-protocol Preprint. bio-protocol.org/prep736.
Liu, Q., Wei, J., Li, Y., Wang, M., Su, J., Lu, Y., López, M. G., Qian, X., Zhu, Z., Wang, H., Gan, M., Jiang, Q., Fu, Y., Takiff, H. E., Comas, I., Li, F., Lu, X., Fortune, S. M. and Gao, Q.(2020). Mycobacterium tuberculosis clinical isolates carry mutational signatures of host immune environments . Science Advances 6(22). DOI: 10.1126/sciadv.aba4901