Materials and Reagents

Cell lines: INT 407, Hep-2, Hela, HT-29 (available from ATCC and other commercial sources)
Vibrio cholerae classical biotype strain O395
Dulbecco’s modified Eagle’s medium (DMEM) (Life Technologies, Gibco^®)
1. High glucose (4,500 mg/L) (catalog number: 12800-017 )
2. Low glucose (1,000 mg/L) (catalog number: 31600-034 )
3. No glucose (catalog number: 11966-025 )
New born calf serum (NCS) (not heat inactivated) (Life Technologies, Gibco^®, catalog number: 16010-159 )
10x Trypsin-EDTA (Life Technologies, Gibco^®, catalog number: 15400 )
TritonX-100 (Affymetrix, catalog number: T1001 )
Dimethyl sulfoxide (DMSO) (Sigma-Aldrich, catalog number: C6164 )
D-(+)-Glucose (Sigma-Aldrich, catalog number: G7021 )
D-Galactose
10x cell lysis buffer (Cell Signaling Technology, catalog number: 9803 )
pNPP (5 mg) (Sigma Chemical, catalog number: N-9389 )
Bacto tryptone (BD, Difco^TM, catalog number: 211705 )
Bacto yeast extract (BD, Difco^TM, catalog number: 212750 )
Bacto agar (BD, Difco^TM, catalog number: 214010 )
NaHCO₃ (Merck KGaA)
NaCl (Merck KGaA)
Na₂HPO₄ (Merck KGaA)
KCl (Merck KGaA)
KH₂PO₄ (Merck KGaA)
70% ethanol (Merck KGaA)
NaOH (Merck KGaA)
Personal protective items (apron, gloves, mask etc.)
Bio-Rad protein assay dye reagent (Bio-Rad Laboratories)
Complete DMEM (100 ml) (see Recipes)
Incomplete DMEM (100 ml) (see Recipes)
No glucose complete DMEM (100ml) (see Recipes)
10x PBS (500 ml, pH 7.4) (see Recipes)
1x PBS (50 ml) (see Recipes)
1x Trypsin-EDTA (10 ml) (see Recipes)
1% Triton X-100 (50 ml) (see Recipes)
0.9% saline solution (see Recipes)
LB medium (100 ml) (see Recipes)
LB Agar (100 ml) (see Recipes)
Alkaline phosphatase assay buffer (10 ml) (see Recipes)

Equipment

25 cm² tissue-culture treated flasks (BD Biosciences, Falcon^®, catalog number: 353108 )
Sterile, disposable 15 ml and 50 ml centrifuge tubes
Sterile, disposable 1.5 ml microcentrifuge tubes
Sterile microtips
Sterile cryovials
Cell scraper (BD Biosciences, Falcon^®)
0.22 μm filter units (Millex-GP) (Millipore, catalog number: SLGP033RS )
CO₂ incubator
Laminar flow hood
Liquid nitrogen storage container
Inverted microscope
Centrifuge
Microcentrifuge
Pipetteman
UV-Vis Spectrophotometer

Procedure

Note: For handling cell lines and bacterial cultures, aseptic techniques must be used and work should be carried out in a sterile laminar flow hood when practicable.

Culturing of cell lines
1. An aliquot of the chosen cell line (approx. 10⁶ cells) stored in liquid nitrogen (see Note 1) was used to seed a 25 cm² tissue culture flask containing 5 ml complete DMEM. The cultures were grown to 70-80% confluency (approx. 4 x 10⁶ cells) at 37 °C in 5% CO₂ humidified atmosphere. INT 407 was grown in low glucose complete DMEM, Hep-2, Hela and undifferentiated HT-29 were grown in high glucose complete DMEM. Differentiated (see Note 2) HT-29 was grown in no glucose complete DMEM at 10% CO₂ humidified atmosphere.
2. The cultures were washed three times with 5 ml 1x phosphate buffered saline (PBS) and 4 ml low glucose incomplete DMEM was added.
Bacterial cell culture
1. A loopful of V. cholerae strain O395 preserved at -70 °C in LB medium containing 20% glycerol was streaked on LB agar plates and incubated at 37 °C for 16-18 h.
2. A loopful of V. cholerae culture from the plate was inoculated into 5 ml LB medium and grown with aeration (shaking at approx. 200 rpm in a rotary shaker) at 37 °C for 16-18 h. From this culture, a 1% inoculum (50 µl) was added to 5 ml LB medium and grown to the mid logarithmic phase (OD₆₀₀ 0.5) with shaking at 37 °C.
3. The V. cholerae culture was centrifuged (5,000 x g, 5 min), washed with 5 ml 1x PBS, and suspended in low glucose incomplete DMEM at a concentration of 10⁹ colony forming units (CFU) per ml (Bacterial cells from approximately 2 ml logarithmic phase cultures in LB medium were suspended in 1 ml incomplete DMEM.).
Bacterial adherence to cell lines
1. Cell lines grown to 70-80% confluency in 25 cm² flasks were used.
2. V. cholerae culture (200 µl, approximately 2 x 10⁸ CFU) in low glucose incomplete DMEM was added to the 70-80% confluent cell lines, resultant multiplicity of infection (MOI) was about 50.
3. After addition of bacteria, the cell lines were incubated for 45 min at 37 °C in 5% CO₂ humidified atmosphere for optimum adherence.
4. After 45 min, the supernatant was discarded and non-adhered bacteria were removed by washing the infected cell line 4 times with 5 ml 1x PBS and then low glucose complete DMEM (5 ml) was added and incubated for different periods of time (1-12 h).
5. After the desired time period, the supernatant was discarded and the infected cell line was washed 4 to 5 times with 5 ml 1x PBS.
6. 1 ml of 1% Triton X-100 was added and incubated for 2 min at room temperature with gentle swirling when the cell line could be seen to lyse and detach from the flask. The total culture was collected in 1.5 ml micro centrifuge tubes and vigorous pipetting or vortexing was done. The Triton X-100 treatment lysed the eukaryotic cells but had no effect on the viability of the bacterial cells (see Note 3).
7. The bacterial cells were collected by centrifugation (5,000 x g, 5 min) at room temperature and the pellet was suspended in 1 ml 1x PBS.
8. From this suspension 10 μl was added in 990 μl of 0.9% saline solution and bacterial CFU was determined by serial dilution and plating on LB agar plates. Remaining adhered bacterial cells could be used for gene expression studies or other purposes.
9. Parallel experiments were performed with V. cholerae under identical conditions but without cell line as an unadhered control.

Notes

Cell lines were stored in liquid nitrogen with 10% DMSO as a cryoprotectant.
HT29 differentiation
1. Differentiation of the HT29 cells was performed essentially as described by Huet et al. (1987).
  1. Undifferentiated HT29 cells were grown to 70-80% confluency in high glucose complete DMEM in 25 cm² flasks.
  2. 1 ml of a solution containing 0.5% trypsin and 1 mM EDTA was added, after about 5 min the detached cells were used to seed a 25 cm² flask containing no glucose complete DMEM supplemented with 20 mM glucose and 1 mM galactose (day 0).
  3. Then the following schedule was followed to gradually increase the concentration of galactose to 5 mM and decrease the concentration of glucose: (a) day 1, 15 mM glucose plus 1 mM galactose; (b) day 2, 10 mM glucose plus 3 mM galactose; (c) day 3, 5 mM glucose plus 4 mM galactose; (d) day 4, 5 mM galactose. The medium was changed every day over the period of 4 days. Once adapted, cells were grown for several passages in no glucose complete DMEM containing galactose (5 mM).
2. Alkaline phosphatase (AP) activity was estimated as a marker of HT29 differentiation (Luongo et al., 2002).
  1. Differentiated and undifferentiated HT29 cells were released from the 70-80% confluent flask by treatment with 1 ml trypsin (0.5%) - EDTA (1 mM) solution, washed three times with 1 ml cold 1x PBS and lysed on ice with 1x cell lysis buffer.
  2. For AP activity assay, 50 μl cell lysate was incubated with 1 ml p-nitrophenyl phosphate (1 mg/ml) in AP assay buffer for 30 min at room temperature and the reaction was stopped by adding 100 μl of 0.1 M K₂HPO₄.
  3. AP activity was calculated as absorbance at 405 nm (A₄₀₅) per mg of total cellular protein. A₄₀₅ was measured against lysates incubated without substrate.
  4. Total protein was estimated by Bradford method using the Bio-Rad protein assay dye reagent.
To examine if 1% Triton X-100 treatment had any effect on bacterial cells, a bacterial culture (OD₆₀₀ 0.5 approximately) was divided into 2 equal parts, one part was treated with Triton X-100 for 2 min, and CFU of the treated and untreated culture was determined. If CFU of the two cultures are comparable, it may be assumed that 1% Triton X-100 treatment had no effect on the viability of the bacterial cells used in the study.

Recipes

Complete DMEM (100 ml)
1.0 g DMEM (low or high glucose)
0.37 g sodium bicarbonate
10 ml NCS (heat-inactivated for 30 min in a 56 °C water bath)
Volume adjusted to 100 ml with deionised water
Filtered using 0.22 μm filter units
Stored at 4 °C
Incomplete DMEM (100 ml)
1.0 g DMEM (low glucose)
0.37 g sodium bicarbonate
Volume adjusted to 100 ml with deionised water
Filtered using 0.22 μm filter units
Stored at 4 °C
No glucose complete DMEM (100 ml)
89 ml liquid DMEM (no glucose)
10 ml heat inactivated NCS
Filtered using 0.22 μm filter units
Stored at 4 °C
10x PBS (500 ml, pH 7.4)
40.0 g NaCl
1.0 g KCl
6.07 g Na₂HPO₄
1.0 g KH₂PO₄
Volume adjusted to 500 ml with deionised water, if required pH adjusted with NaOH
Autoclaved
1x PBS (50 ml)
5 ml of 10x PBS diluted in 45 ml of deionised water
Filtered using 0.22 μm filter units
1x Trypsin-EDTA (10 ml)
1 ml of 10x Trypsin-EDTA diluted in 9 ml of sterile 1x PBS
1 ml aliquots distributed in centrifuge tubes
Stored at 4 °C
1% Triton X-100 (50 ml)
0.5 ml 100% Triton X diluted in 49.5 ml of sterile 1x PBS
0.9% saline solution
0.9 g NaCl in 100 ml deionised water
Autoclaved
LB medium (100 ml)
1 g Bacto tryptone (1%)
0.5 g Bacto yeast extract (0.5%)
0.5 g NaCl (0.5%)
Volume adjusted to 100 ml with deionised water, pH adjusted to 8.6 with NaOH
Autoclaved
LB Agar (100 ml)
100 ml LB medium
1.5 g Bacto agar (1.5%)
Volume adjusted to 100 ml with deionised water, pH adjusted to 7.4 with NaOH
Autoclaved
Alkaline phosphatase assay buffer (10 ml)
1 ml 1 M Tris/HCl (pH 9.5) (final concentration 100 mM)
50 µl 1 M MgCl₂(final concentration 5 mM)
Volume adjusted to 10 ml with deionised water
Autoclaved

Acknowledgments

This protocol is adapted from Huet et al. (1987); Luongo et al. (2002); and Dey et al. (2013).

References

Dey, A. K., Bhagat, A. and Chowdhury, R. (2013). Host cell contact induces expression of virulence factors and VieA, a cyclic di-GMP phosphodiesterase, in Vibrio cholerae. J Bacteriol 195: 2004-2010.
Huet, C., Sahuquillo-Merino, C., Coudrier, E. and Louvard, D. (1987). Absorptive and mucus-secreting subclones isolated from a multipotent intestinal cell line (HT-29) provide new models for cell polarity and terminal differentiation. J Cell Biol 105: 345-357.
Luongo, D., Mazzarella, G., Della, R. F., Maurano, F. and Rossi, M. (2002). Down-regulation of ERK1 and ERK2 activity during differentiation of the intestinal cell line HT-29. Mol Cell Biochem 231: 43-50.