TY - JOUR TI - An Integrated Workflow for Three-Dimensional Visualization of Human Skeletal Muscle Stem Cell Nuclei AU - Pearson, Jeremy R. AU - Martinez-Rivera, Noraida AU - Torres-Vasquez, Irma AU - Gallagher, Philip M. AU - Rosa-Molinar, Eduardo VL - 15 IS - 8 PY - 2025 DA - 2025/04/20 SP - e5281 C1 - Bio-protocol 2025;15:e5281 DO - 10.21769/BioProtoc.5281 UR - https://doi.org/10.21769/BioProtoc.5281 AB - Skeletal muscle–specific stem cells are responsible for regenerating damaged muscle tissue following strenuous physical activity. These muscle stem cells, also known as satellite cells (SCs), can activate, proliferate, and differentiate to form new skeletal muscle cells. SCs can be identified and visualized utilizing optical and electron microscopy techniques. However, studies identifying SCs using fluorescent imaging techniques vary significantly within their methodology and lack fundamental aspects of the guidelines for rigor and reproducibility that must be included within immunohistochemical studies. Therefore, a standardized method for identifying human skeletal muscle stem cells is warranted, which will improve the reproducibility of future studies investigating satellite activity. Additionally, although it has been suggested that SC shape can change after exercise, there are currently no methods for examining SC morphology. Thus, we present an integrated workflow for three-dimensional visualization of satellite cell nuclei, validated by the spatial context of the fluorescent labeling and multichannel signal overlap. Our protocol includes, from start to finish, post-biopsy extraction and embedding, tissue sectioning, immunofluorescence, imaging steps and acquisition, and three-dimensional data post-processing. Because of the depth volume generated from the confocal microscope z-stacks, this will allow future studies to investigate the morphology of SC nuclei and their activity, instead of traditionally observing them in two-dimensional space (x, y). KW - Satellite cells KW - Immunohistochemistry KW - Muscle regeneration KW - Fluorescent microscopy KW - Muscle damage KW - Myofiber cross-sectional area JF - Bio-protocol SN - 2331-8325 PB - Bio-protocol LLC. BIO101 - False