Alexandros Alexandratos National and Kapodistrian University of Athens
30 protocols

Alka Mehra Institute of Genomics and Integrative Biology
35 protocols

Arsalan Daudi University of California
157 protocols

Aswad Khadilkar UNIVERSITY OF CALIFORNIA SANTA CRUZ
11 protocols

Editor
Prashanth N Suravajhala
  • Research scientist, Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, India
Research focus
  • Systems biology
  • Systems Biology, Next Generation Sequencing, Functional Genomics, non-coding RNA
  • 4 Author merit

Education

PhD, Aalborg University

Lab information

Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, Statue Circle, Jaipur 302001 RJ, India
http://bisr.res.in/profile_prash.php

Publications

4 Protocols published
A Bioinformatics Pipeline for Whole Exome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis
Authors:  Narendra Meena, Praveen Mathur, Krishna Mohan Medicherla and Prashanth Suravajhala, date: 04/20/2018, view: 19898, Q&A: 0
Recent advances in Next Generation Sequencing (NGS) technologies have given an impetus to find causality for rare genetic disorders. Since 2005 and aftermath of the human genome project, efforts have been made to understand the rare variants of ...
10 Protocols reviewed
ChIP-Seq from Limited Starting Material of K562 Cells and Drosophila Neuroblasts Using Tagmentation Assisted Fragmentation Approach
Authors:  Junaid Akhtar, Piyush More and Steffen Albrecht, date: 02/20/2020, view: 691, Q&A: 0
Chromatin immunoprecipitation is extensively used to investigate the epigenetic profile and transcription factor binding sites in the genome. However, when the starting material is limited, the conventional ChIP-Seq approach cannot be implemented. ...
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Preparation of Sequencing RNA Libraries through Chemical Cross-linking Coupled to Affinity Purification (cCLAP) in Saccharomyces cerevisiae
Authors:  Congwei Wang, Julie Weidner and Anne Spang, date: 10/05/2018, view: 3247, Q&A: 0
Ribonucleoprotein particles (mRNPs) are complexes consisting of mRNAs and RNA-binding proteins (RBPs) which control mRNA transcription localization, turnover, and translation. Some mRNAs within the mRNPs have been shown to undergo degradation or ...
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5 Protocols edited
Sequence Alignment Using Machine Learning for Accurate Template-based Protein Structure Prediction
Authors:  Shuichiro Makigaki and Takashi Ishida, date: 05/05/2020, view: 815, Q&A: 0
Template-based modeling, the process of predicting the tertiary structure of a protein by using homologous protein structures, is useful when good templates can be available. Indeed, modern homology detection methods can find remote homologs with ...
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Approaching RNA-seq for Cell Line Identification
Authors:  Tabrez A. Mohammad and Yidong Chen, date: 02/05/2020, view: 936, Q&A: 0
Cancer cell lines serve as invaluable model systems for cancer biology research and help in evaluating the efficacy of new therapeutic agents. However, cell line contamination and misidentification have become one of the most pressing problems ...
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